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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Manuel Aleman | 20th | Jesus Cervantes | 26th | 27th |
| First Basemen | David Simpson | 3rd | Nick Suydam | 21st | 3rd |
| Second Basemen | Shane Desch | 30th | J.J. Maloy | 15th | 27th |
| Third Basemen | Justin Walker | 17th | Ken Mynard | 23rd | 27th |
| Shortstops | Eric Pajak | 2nd | Tied for 29th | 18th | |
| Left Fielders | Willem Acret | 14th | Josh Gooch | 3rd | Tied for 9th |
| Center Fielders | Cody O'Grady | 8th | Cliff Worley | Tied for 14th | 7th |
| Right Fielders | Mike Clingerman | 2nd | Ryan Murphy | 26th | 14th |
| Starting Pitchers | Chad Morrisette | 8th | Alex Castaneda | 29th | 29th |
| Relievers | Mark Sonnier | 9th | Marco Castanon | 19th | 7th |
| Closers | Brian Granados | 18th | Nick Hirsch | 18th | 14th |
