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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Ryan Gruber | 9th | Alex Lopez | 15th | 5th |
| First Basemen | Tony Gomez | 12th | Josh Budge | 12th | 12th |
| Second Basemen | Nick Lindley | 4th | Jorge Davalos | 17th | 4th |
| Third Basemen | John Bunch | Tied for 17th | Julio Holguin | Tied for 19th | 18th |
| Shortstops | Jaime Flores | 16th | Eric Webb | Tied for 13th | 10th |
| Left Fielders | Zach Yocom | 3rd | Manny Diaz | Tied for 16th | 5th |
| Center Fielders | Eddie Benavidez | 12th | Kevin Donhauser | 12th | 8th |
| Right Fielders | Russ Boswell | 7th | Pedro Montes | 4th | 6th |
| Starting Pitchers | Xavier Florez | 18th | Xavier Boyle | 3rd | 16th |
| Relievers | Steve Cason | 19th | Mike Mackey | 29th | 27th |
| Closers | Mel Martinez | 20th | Gabe Smith | 19th | 21st |
