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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mike Baughman | 26th | Dan Edenfield | 2nd | 16th |
| First Basemen | Francisco Recinos | 27th | Matt Farkas | 2nd | 24th |
| Second Basemen | Aaron Mann | 17th | Tony de la Rosa | 1st | 12th |
| Third Basemen | Adam Nicholson | 20th | Mike Cates | 4th | 15th |
| Shortstops | Jesus Armijo | 21st | Oscar Perez | 13th | 14th |
| Left Fielders | Joe Elsensohn | 7th | Willie Zelaya | 27th | 25th |
| Center Fielders | Eric Small | 15th | Mike Washburne | 21st | 22nd |
| Right Fielders | John Forgue | 17th | Mauricio Gonzales | 28th | 28th |
| Starting Pitchers | Andre Brown | 30th | Josh Resar | 6th | 26th |
| Relievers | Jonathan Marquez | 17th | Jose Rodriguez | 1st | 7th |
| Closers | Alonzo Sanchez | 26th | Jose Fuentes | 11th | 25th |
