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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Dusty Slaughter | 1st | Jordan Vazquez | 1st | 1st |
| First Basemen | Jon Luttrell | 17th | Alex Diaz | 7th | Tied for 14th |
| Second Basemen | Omar Hard | 20th | Dan Hockett | 11th | 17th |
| Third Basemen | Brendan Blythe | 23rd | Angelo Martinez | Tied for 19th | 22nd |
| Shortstops | Mario Vargas | 22nd | Justin Bernabei | 12th | 12th |
| Left Fielders | Ivan Kontic | 19th | Blake Morgan | 13th | 18th |
| Center Fielders | Jessie Sherry | 8th | Nate Nelson | 4th | 5th |
| Right Fielders | Miguel Gonzalez | 28th | Dave Aemisegger | 14th | 21st |
| Starting Pitchers | Bobby Doherty | 17th | Tony Mosley | 25th | 17th |
| Relievers | Aaron Andros | 23rd | Mike Richards | 12th | 15th |
| Closers | Brad Morris | 1st | Eric Villanueva | 6th | 1st |
