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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jesus Moreno | 26th | Tied for 28th | 30th | |
| First Basemen | Danny Garcia | 14th | John Pugliese | 22nd | 12th |
| Second Basemen | Dave Chilcote | 10th | Humberto Martinez | 11th | 9th |
| Third Basemen | Raul Ortiz | Tied for 13th | Vincent Tapia | 2nd | 6th |
| Shortstops | Cheng-ji Yang | 18th | Raul Roa | Tied for 10th | 12th |
| Left Fielders | Chris Rizzo | 21st | Chase Porter | 25th | 26th |
| Center Fielders | Jim Miller | 2nd | Josh Armand | 6th | 2nd |
| Right Fielders | Chris Titus | 12th | Quoc-Tai Vu | 9th | 9th |
| Starting Pitchers | Gabe Vargas | 30th | Jon Perkins | 16th | 28th |
| Relievers | Troy Thomas | 11th | Tim Hall | 6th | 5th |
| Closers | Eugênio Risso | 22nd | Ezequiel Bonet | 30th | 28th |
