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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Steve Brohard | 12th | Chad Parga | 17th | 11th |
| First Basemen | Matt Ferris | 11th | John Stout | 13th | 11th |
| Second Basemen | Israel Galvan | 23rd | Luke Cappelluti | Tied for 23rd | 22nd |
| Third Basemen | Travis Hall | 23rd | Dave Tennant | 14th | 19th |
| Shortstops | Eric Petry | 24th | 28th | 29th | |
| Left Fielders | Colin Woodson | 10th | Brenden McFaul | 28th | 28th |
| Center Fielders | Chris Grover | 21st | Juan Maes | 8th | 15th |
| Right Fielders | Gilberto Ruiz | 21st | Jason Sisk | Tied for 14th | 17th |
| Starting Pitchers | Juan Murillo | 2nd | Jim Johnson | 28th | 19th |
| Relievers | Antonio Garcia | 11th | Steve Gibbons | 29th | 22nd |
| Closers | Jonathan Jackson | 6th | Cameron Lopez | Tied for 25th | 8th |
